# filelist

dirname: /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/plugins/external_tool_support/src/mfold
filetypes: ffffffffff
filenames:
  MfoldDialog.cpp/MfoldDialog.h/MfoldSettings.cpp/MfoldSettings.h/MfoldSupport.cpp/MfoldSupport.h/MfoldTask.cpp/MfoldTask.h/MfoldTests.cpp/MfoldTests.h


dirname: /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/corelibs/U2View/src/ov_msa
filenames:
  AlignmentLogo.cpp/AlignmentLogo.h/BaseWidthController.cpp/BaseWidthController.h/ColorSchemaDialogController.cpp/ColorSchemaDialogController.h/ColorSchemaSettingsController.cpp/ColorSchemaSettingsController.h/CreateSubalignmentDialogController.cpp/CreateSubalignmentDialogController.h/DeleteGapsDialog.cpp/DeleteGapsDialog.h/DrawHelper.cpp/DrawHelper.h/ExportHighlightedDialogController.cpp/ExportHighlightedDialogController.h/MaAmbiguousCharactersController.cpp/MaAmbiguousCharactersController.h/MaCollapseModel.cpp/MaCollapseModel.h/MaConsensusAreaRenderer.cpp/MaConsensusAreaRenderer.h/MaEditor.cpp/MaEditor.h/MaEditorConsensusArea.cpp/MaEditorConsensusArea.h/MaEditorConsensusAreaSettings.cpp/MaEditorConsensusAreaSettings.h/MaEditorContext.cpp/MaEditorContext.h/MaEditorFactory.cpp/MaEditorFactory.h/MaEditorNameList.cpp/MaEditorNameList.h/MaEditorSelection.cpp/MaEditorSelection.h/MaEditorSequenceArea.cpp/MaEditorSequenceArea.h/MaEditorSplitters.cpp/MaEditorSplitters.h/MaEditorState.cpp/MaEditorState.h/MaEditorStatusBar.cpp/MaEditorStatusBar.h/MaEditorTasks.cpp/MaEditorTasks.h/MaEditorUtils.cpp/MaEditorUtils.h/MaEditorWgt.cpp/MaEditorWgt.h/MsaEditor.cpp/MsaEditor.h/MsaEditorConsensusArea.cpp/MsaEditorConsensusArea.h/MsaEditorConsensusCache.cpp/MsaEditorConsensusCache.h/MsaEditorMultilineWgt.cpp/MsaEditorMultilineWgt.h/MsaEditorNameList.cpp/MsaEditorNameList.h/MsaEditorOffsetsView.cpp/MsaEditorOffsetsView.h/MsaEditorOverviewArea.cpp/MsaEditorOverviewArea.h/MsaEditorSequenceArea.cpp/MsaEditorSequenceArea.h/MsaEditorSimilarityColumn.cpp/MsaEditorSimilarityColumn.h/MsaEditorStatusBar.cpp/MsaEditorStatusBar.h/MsaEditorUserModStepController.cpp/MsaEditorUserModStepController.h/MsaEditorWgt.cpp/MsaEditorWgt.h/MsaMultilineScrollArea.cpp/MsaMultilineScrollArea.h/MsaOpSavableTab.cpp/MsaOpSavableTab.h/MsaRowHeightController.cpp/MsaRowHeightController.h/MsaSelectSubalignmentDialog.cpp/MsaSelectSubalignmentDialog.h/MultilineScrollController.cpp/MultilineScrollController.h/RowHeightController.cpp/RowHeightController.h/ScrollController.cpp/ScrollController.h/SequenceAreaRenderer.cpp/SequenceAreaRenderer.h/SequenceSelectorWidgetController.cpp/SequenceSelectorWidgetController.h/align_to_alignment/clipboard/exclude_list/export_consensus/export_image/find_pattern/general_tab/highlighting/move_to_object/overview/pairwise_alignment/phy_tree/phy_tree_tab/ref_seq_widget/sort/statistics

filetypes:
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dirname: /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/plugins/GUITestBase/src/tests/crazy_user
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filenames:
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dirname: /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/plugins/remote_blast/_tmp/moc/release
filetypes: ffffffff
filenames:
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dirname: /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/corelibs/U2Lang/_tmp/moc/release
filetypes: ffffffffffffffffffffffffffffffffffffffffff
filenames:
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filenames: GTTestsMfold.cpp/GTTestsMfold.h
filetypes: ff
dirname:
  /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/plugins/GUITestBase/src/tests/common_scenarios/external_tools/mfold


dirname: /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/libs_3rdparty/QSpec/src/base_dialogs
filetypes: ffffffff
filenames:
  ColorDialogFiller.cpp/ColorDialogFiller.h/DefaultDialogFiller.cpp/DefaultDialogFiller.h/FontDialogFiller.cpp/FontDialogFiller.h/MessageBoxFiller.cpp/MessageBoxFiller.h


filenames: GTTestsWorkflowNameFilter.cpp/GTTestsWorkflowNameFilter.h
filetypes: ff
dirname:
  /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/plugins/GUITestBase/src/tests/common_scenarios/workflow_designer/name_filter


filenames: colored
filetypes: d
dirname:
  /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/corelibs/U2Algorithm/src/util_msaedit/color_schemes/percentage_idententity


dirname: /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/plugins/dna_flexibility/src
filetypes: fffffffffffffffff
filenames:
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filenames: PwmBuildDialogFiller.cpp/PwmBuildDialogFiller.h/PwmSearchDialogFiller.cpp/PwmSearchDialogFiller.h
filetypes: ffff
dirname:
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dirname: /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/plugins/enzymes/_tmp/moc/release
filetypes: fffffffffffffffff
filenames:
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dirname: /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/plugins/pcr/src/export
filetypes: ffffff
filenames:
  ExportPrimersDialog.cpp/ExportPrimersDialog.h/ExportPrimersToDatabaseTask.cpp/ExportPrimersToDatabaseTask.h/ExportPrimersToLocalFileTask.cpp/ExportPrimersToLocalFileTask.h


dirname: /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/corelibs/U2Designer/_tmp/moc/release
filetypes: fffffffffffffffffffffffffffffffffffffffffffff
filenames:
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dirname: /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/plugins_3rdparty/sitecon/src
filetypes: fffffffffffffffffffffffffff
filenames:
  DIPropertiesSitecon.cpp/DIPropertiesSitecon.h/DIPropertiesTests.cpp/DIPropertiesTests.h/SiteconAlgorithm.cpp/SiteconAlgorithm.h/SiteconAlgorithmTests.cpp/SiteconAlgorithmTests.h/SiteconBuildDialogController.cpp/SiteconBuildDialogController.h/SiteconBuildWorker.cpp/SiteconIO.cpp/SiteconIO.h/SiteconIOWorkers.cpp/SiteconIOWorkers.h/SiteconMath.cpp/SiteconMath.h/SiteconPlugin.cpp/SiteconPlugin.h/SiteconQuery.cpp/SiteconQuery.h/SiteconSearchDialogController.cpp/SiteconSearchDialogController.h/SiteconSearchTask.cpp/SiteconSearchTask.h/SiteconSearchWorker.cpp/SiteconWorkers.h


dirname: /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/corelibs/U2View/src/ov_sequence/view_rendering
filetypes: ffffffffffff
filenames:
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filenames: GTTestsAlignSequenceToMsa.cpp/GTTestsAlignSequenceToMsa.h
filetypes: ff
dirname:
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dirname: /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/plugins/external_tool_support/src
filetypes: fffffffffffffffffdddddddddddddddddddddddddddddddddd
filenames:
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dirname: /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/plugins/dna_flexibility/_tmp/moc/release
filetypes: fffff
filenames:
  moc_DNAFlexDialog.cpp/moc_DNAFlexGraph.cpp/moc_DNAFlexPlugin.cpp/moc_DNAFlexTask.cpp/moc_FindHighFlexRegions.cpp


dirname: /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/plugins/external_tool_support/_tmp/ui
filetypes: ffffffffffffffffffffffffffffffffffff
filenames:
  ui_AlignToReferenceBlastDialog.h/ui_BlastDBCmdDialog.h/ui_BlastDBSelectorWidget.h/ui_BlastLocalSearchDialog.h/ui_Bowtie2Settings.h/ui_BowtieBuildSettings.h/ui_BowtieSettings.h/ui_BwaBuildSettings.h/ui_BwaMemSettings.h/ui_BwaSettings.h/ui_BwaSwSettings.h/ui_CAP3SupportDialog.h/ui_ClustalOSupportRunDialog.h/ui_ClustalWSupportRunDialog.h/ui_ETSSettingsWidget.h/ui_HmmerBuildDialog.h/ui_HmmerSearchDialog.h/ui_IlluminaClipAdditionalSettingsDialog.h/ui_IlluminaClipSettingsWidget.h/ui_ImportExternalToolDialog.h/ui_KalignPairwiseAlignmentOptionsWidget.h/ui_KalignSupportRunDialog.h/ui_LengthSettingsWidget.h/ui_MAFFTSupportRunDialog.h/ui_MakeBlastDbDialog.h/ui_MaxInfoSettingsWidget.h/ui_MfoldDialog.h/ui_MrBayesDialog.h/ui_PhmmerSearchDialog.h/ui_PhyMLDialog.h/ui_QualitySettingsWidget.h/ui_SlidingWindowSettingsWidget.h/ui_SnpEffDatabaseDialog.h/ui_SpadesInputData.h/ui_SpadesSettings.h/ui_TrimmomaticPropertyDialog.h


filenames: GTTestsOptionPanelMSAMultiline.cpp/GTTestsOptionPanelMSAMultiline.h
filetypes: ff
dirname:
  /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/plugins/GUITestBase/src/tests/common_scenarios/msa_editor/multiline/options


dirname: /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/plugins/api_tests/src/core/util
filetypes: ffffffffffff
filenames:
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dirname: /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/plugins/enzymes/_tmp/ui
filetypes: fffffff
filenames:
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filenames: GTTestsDnaAssembly.cpp/GTTestsDnaAssembly.h/GTTestsIndexReuse.cpp/GTTestsIndexReuse.h/conversions
filetypes: ffffd
dirname:
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dirname: /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/corelibs/U2View/src/ov_msa/find_pattern
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filenames:
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dirname: /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/corelibs/U2View/src/ov_phyltree/item
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filenames:
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dirname: /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/plugins_3rdparty/ptools/src/ptools
filetypes: ffffffffffffffffffffff
filenames:
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filenames: microdump_writer.cc/microdump_writer.h
filetypes: ff
dirname:
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dirname: /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/plugins_3rdparty/hmm2/src
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filenames:
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dirname: /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/corelibs/U2Core/src/datatype/msa
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filenames:
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dirname: /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/plugins/GUITestBase/_tmp/moc/release
filetypes: ffffffffff
filenames:
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dirname: /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/plugins/GUITestBase/src/tests
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filenames:
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filenames: GTTestsWorkspace.cpp/GTTestsWorkspace.h
filetypes: ff
dirname:
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filenames: GTTestsFromProjectView.cpp/GTTestsFromProjectView.h
filetypes: ff
dirname:
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dirname: /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/plugins/circular_view/_tmp/moc/release
filetypes: fffffffff
filenames:
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filenames: GTTestsMSAEditorReplaceCharacter.cpp/GTTestsMSAEditorReplaceCharacter.h
filetypes: ff
dirname:
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dirname: /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/plugins/external_tool_support/src/bowtie
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filenames:
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filenames: GTTestsCvGeneral.cpp/GTTestsCvGeneral.h
filetypes: ff
dirname:
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dirname: /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/plugins/external_tool_support/src/bedtools
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dirname: /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/corelibs/U2Core/src/datatype/primers
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dirname: /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/corelibs/U2View/src/ov_msa/overview
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dirname: /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/plugins/GUITestBase/src/runnables/ugene/plugins/dotplot
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filetypes: ffffffffffffff
dirname:
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filenames:
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dirname: /usr/src/debug/ugene-52.1-3.fc43.x86_64/src/corelibs/U2Formats/src/sqlite_dbi/assembly
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